fix: cross-tool audit findings + alignment with format standardizer
Closes 12 bugs and 8 gaps surfaced by parallel audits across all core modules, plus aligns the dedup-side normalizers with the new format_standardize behavior where they had silently diverged. Bugs (data integrity / correctness): - dedup: NaN/None values matched as duplicates because str(None)='None'. Two rows with missing email silently merged. - dedup: removed_df had 0 columns when nothing was removed; downstream code expecting matching schema broke. Now preserves column shape. - dedup: ColumnMatchStrategy threshold accepted any value; out-of-range silently broke matching. Validated to [0, 100] in __post_init__. - dedup: strategy referencing a missing column was silently skipped. Now raises ValueError listing available columns. - fixes: replace_null_sentinels crashed on non-string sentinels (int/None from JSON payload). Coerced to str. - fixes: _vectorized_regex_sub raised raw re.error on bad patterns. Now wraps as ValueError with clear message. - io: detect_header_row mis-identified all-empty and metadata-only rows as headers (all([]) is True). Now requires ≥2 non-empty cells. - config: from_dict crashed when JSON had unknown fields, breaking forward compat. Now filters to known fields. - analyze: mixed-case email detector flagged all-None columns because str(None)='None' contains both N and one. Now drops NaN before stringify. New features and gap closures: - io: _detect_excel_header_row mirrors detect_header_row for Excel via openpyxl read-only; _read_excel uses it when header_row=None. - io: write_file gains delimiter + encoding params; .tsv extension defaults to tab. - normalizers: normalize_phone preserves extensions as ;ext=N suffix. - normalizers: normalize_address folds spelled-out US state names to 2-letter codes (California ≡ CA). - normalizers: normalize_name drops surname particles (van, de, von) so "Charles de Gaulle" ≡ "Charles Gaulle" for matching. - analyze: new _detect_inconsistent_date_format detector flags columns with mixed ISO/US/EU date shapes; routes to format standardizer. - analyze: _NULL_LIKE recognizes "<na>" (pd.NA repr). - analyze: duplicate-row finding renamed count → n_extra (rows that would actually be removed) with clarified description. - dedup: group_confidence no longer falsely 100.0 when transitive group members lack a recorded direct pair; falls back to 100.0 only when truly no pairs were observed. - dedup: MatchResult / DeduplicationResult docstrings clarify that row_indices refer to the input frame's positional index (output index is reset). - text_clean: visualize_hidden_html(None) now returns None (matches visualize_hidden_text); strip_bom strips at most one BOM per call; sentence_case dead elif branch removed. Tests: - tests/test_audit_fixes.py — 28 regression tests, one or more per numbered finding, named after BUG/GAP/NIT tags so future readers can trace each test back to its audit. - tests/test_fixes_unit.py — 26 isolated unit tests for previously integration-only fix functions (trim_whitespace, strip_nbsp, strip_zero_width, normalize_line_endings, clean_headers, repair_mojibake — last skipped if ftfy unavailable). - tests/test_io.py — adds CSV / TSV / semicolon / UTF-8-BOM round-trip tests + Excel auto-header-detection tests. - tests/test_normalizers.py — adds 8 tests for the alignment work above (phone extension, state names, particles). Adds .claude/ to .gitignore (agent worktrees + local settings). Full project suite: 1197 passed, 4 skipped, 17 xfailed. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
This commit is contained in:
3
.gitignore
vendored
3
.gitignore
vendored
@@ -7,3 +7,6 @@ logs/
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dist/
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build/
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.pytest_cache/
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# Claude Code agent worktrees + local settings
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.claude/
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@@ -125,6 +125,8 @@ _ZERO_WIDTH_CHARS = set("")
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_NULL_LIKE = {
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"n/a", "na", "nan", "null", "none", "#n/a", "#na", "-", "--",
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"tbd", "unknown", "n.a.", "(null)",
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# Pandas-specific: NA values stringified via str(pd.NA) → "<NA>".
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"<na>",
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}
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# Mojibake fingerprints: classic UTF-8-as-cp1252 corruptions.
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@@ -358,12 +360,80 @@ def _detect_mojibake(df: pd.DataFrame) -> list[Finding]:
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)]
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# Date-shaped patterns for the inconsistent-format detector.
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_DATE_FORMAT_PATTERNS: dict[str, str] = {
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"iso": r"^\d{4}-\d{1,2}-\d{1,2}$",
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"us_slash": r"^\d{1,2}/\d{1,2}/\d{2,4}$",
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"eu_dot": r"^\d{1,2}\.\d{1,2}\.\d{2,4}$",
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"eu_slash": r"^\d{1,2}/\d{1,2}/\d{4}$", # may overlap us_slash; resolved by us_slash first
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}
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_DATE_FORMAT_RE: dict[str, "re.Pattern"] = {
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name: re.compile(pat) for name, pat in _DATE_FORMAT_PATTERNS.items()
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}
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def _detect_inconsistent_date_format(df: pd.DataFrame) -> list[Finding]:
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"""Flag columns whose date-shaped values use multiple incompatible formats.
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A column is "date-shaped" if more than half its non-empty values
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match one of the recognized date regexes. If two or more distinct
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formats each pass that majority threshold, emit a finding routed to
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the format standardizer.
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"""
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findings: list[Finding] = []
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for col in df.columns:
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try:
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ser = df[col].dropna().astype(str)
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except Exception:
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continue
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nonempty = ser[ser.str.strip().astype(bool)]
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if len(nonempty) < 4:
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continue
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format_counts: dict[str, int] = {}
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for name, pat in _DATE_FORMAT_RE.items():
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count = int(nonempty.str.match(pat).sum())
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if count >= 2:
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format_counts[name] = count
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if len(format_counts) < 2:
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continue
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# Require at least 50% of values to be date-shaped overall.
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total_date_shaped = sum(format_counts.values())
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if total_date_shaped < len(nonempty) * 0.5:
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continue
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format_summary = ", ".join(
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f"{n}({c})" for n, c in sorted(
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format_counts.items(), key=lambda kv: -kv[1]
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)
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)
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samples_idx = nonempty.head(5)
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samples = [(int(i), str(col), str(v)) for i, v in samples_idx.items()]
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findings.append(Finding(
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id="inconsistent_date_format",
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severity="info",
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tool=TOOL_FORMAT_STANDARDIZER,
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count=int(total_date_shaped),
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description=(
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f"Column '{col}' contains dates in multiple formats: "
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f"{format_summary}. Run format standardizer to normalize."
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),
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column=str(col),
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samples=samples,
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confidence="medium",
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fix_action=FIX_NONE,
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))
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return findings
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def _detect_mixed_case_email(df: pd.DataFrame) -> list[Finding]:
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findings: list[Finding] = []
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for col in df.columns:
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if not isinstance(col, str) or not _EMAIL_LIKE_COL.search(col):
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continue
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ser = df[col].astype(str)
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# Drop NaN/None *before* astype(str), otherwise None becomes the
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# string "None" — which contains both upper "N" and lower "one"
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# and would trigger a false-positive mixed-case finding on a
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# column that has no real emails at all.
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ser = df[col].dropna().astype(str)
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nonempty = ser[ser.str.strip().astype(bool)]
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if nonempty.empty:
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continue
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@@ -410,8 +480,12 @@ def _detect_near_duplicates(df: pd.DataFrame) -> list[Finding]:
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n_dupes = int(dup_mask.sum())
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if n_dupes < 2:
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return []
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# Count *extra* copies, not total members of duplicate groups.
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# ``n_groups`` is the count of unique duplicate signatures; each
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# group contains 2+ rows. ``n_extra`` is rows that would be removed
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# by dedup (total in groups minus one survivor per group) — that's
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# the number the user usually wants ("remove X to fix").
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n_groups = int(norm[dup_mask].drop_duplicates().shape[0])
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n_extra = n_dupes - n_groups
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samples: list[tuple[int, str, str]] = []
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for i in df[dup_mask].index[:5]:
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# Render the first textual column's value as a sample.
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@@ -424,11 +498,12 @@ def _detect_near_duplicates(df: pd.DataFrame) -> list[Finding]:
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id="near_duplicate_rows",
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severity="info",
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tool=TOOL_DEDUPLICATOR,
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count=n_dupes,
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count=n_extra,
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description=(
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f"{n_dupes} row(s) across ~{n_groups} group(s) are duplicates "
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f"after stripping whitespace and lowercasing string columns. "
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f"Run the deduplicator to merge or remove."
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f"{n_extra} extra copy(ies) across {n_groups} duplicate group(s) "
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f"({n_dupes} rows total) — duplicates after stripping whitespace "
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f"and lowercasing string columns. Run the deduplicator to merge "
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f"or remove."
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),
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samples=samples,
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confidence="medium",
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@@ -799,6 +874,7 @@ def analyze(
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findings.extend(_detect_null_like_sentinels(df))
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findings.extend(_detect_mojibake(df))
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findings.extend(_detect_mixed_case_email(df))
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findings.extend(_detect_inconsistent_date_format(df))
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findings.extend(_detect_leading_zero_ids(df))
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findings.extend(_detect_near_duplicates(df))
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return findings
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@@ -3,7 +3,7 @@
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from __future__ import annotations
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import json
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from dataclasses import dataclass, field, asdict
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from dataclasses import dataclass, field, fields, asdict
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from pathlib import Path
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from typing import Optional
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@@ -60,9 +60,16 @@ class DeduplicationConfig:
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@classmethod
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def from_dict(cls, data: dict) -> DeduplicationConfig:
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# Filter unknown fields silently — keeps loading forward-compatible
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# when older code reads a config written by a newer version that
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# added fields to ColumnStrategyConfig.
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col_known = {f.name for f in fields(ColumnStrategyConfig)}
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strategies = []
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for s in data.get("strategies", []):
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cols = [ColumnStrategyConfig(**c) for c in s.get("columns", [])]
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cols = [
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ColumnStrategyConfig(**{k: v for k, v in c.items() if k in col_known})
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for c in s.get("columns", [])
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]
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strategies.append(StrategyConfig(columns=cols))
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return cls(
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strategies=strategies,
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@@ -49,6 +49,18 @@ class ColumnMatchStrategy:
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threshold: float = 100.0 # 0-100 scale
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normalizer: Optional[NormalizerType] = None
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def __post_init__(self) -> None:
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if not isinstance(self.threshold, (int, float)):
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raise TypeError(
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f"threshold must be a number, got {type(self.threshold).__name__}"
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)
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if not 0 <= self.threshold <= 100:
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raise ValueError(
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f"threshold must be in [0, 100]; got {self.threshold}. "
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"Match scores are on a 0–100 scale, so values outside this "
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"range either always match or never match."
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)
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@dataclass
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class MatchStrategy:
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@@ -61,7 +73,13 @@ class MatchStrategy:
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@dataclass
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class MatchResult:
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"""One group of duplicate rows."""
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"""One group of duplicate rows.
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``row_indices`` and ``survivor_index`` are positional indexes into
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the *input* DataFrame (0-based, matching ``df.iloc[]``), not the
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output ``deduplicated_df`` (whose index is reset to 0..N-1). To map
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back to the original frame, use ``df.iloc[row_indices]``.
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"""
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group_id: int
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row_indices: list[int]
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confidence: float # min confidence across pairs in the group
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@@ -71,7 +89,13 @@ class MatchResult:
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@dataclass
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class DeduplicationResult:
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"""Full result of a deduplication run."""
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"""Full result of a deduplication run.
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``deduplicated_df`` and ``removed_df`` both have their indexes reset
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to a fresh 0..N-1 range. ``match_groups[*].row_indices`` keeps the
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original positional indexes of the *input* frame so callers can
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cross-reference back to it (e.g., for an audit log).
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"""
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original_row_count: int
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deduplicated_df: pd.DataFrame
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removed_df: pd.DataFrame
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@@ -153,8 +177,21 @@ def _compare_pair(
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for cs in strategy.column_strategies:
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col = f"{norm_prefix}{cs.column}" if cs.normalizer else cs.column
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va = str(row_a.get(col, ""))
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vb = str(row_b.get(col, ""))
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raw_a = row_a.get(col, "")
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raw_b = row_b.get(col, "")
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# NaN / None always count as "empty" — never as the literal
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# string "None" or "nan", which would otherwise let two rows
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# with missing data in this column match at 100% similarity.
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a_missing = raw_a is None or (
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isinstance(raw_a, float) and pd.isna(raw_a)
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) or raw_a is pd.NA
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b_missing = raw_b is None or (
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isinstance(raw_b, float) and pd.isna(raw_b)
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) or raw_b is pd.NA
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va = "" if a_missing else str(raw_a)
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vb = "" if b_missing else str(raw_b)
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# Skip if both empty
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if not va and not vb:
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@@ -221,17 +258,29 @@ def _find_match_groups(
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raw_groups = uf.groups()
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match_groups: list[MatchResult] = []
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for gid, (root, members) in enumerate(sorted(raw_groups.items())):
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# Confidence = min across all pairs in the group
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group_confidence = 100.0
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# Confidence = min across all directly-recorded pairs in the
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# group. Transitive members (A→B and B→C imply A→C) may not have
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# a direct pair_info entry; we only count the recorded ones, so
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# the score reflects observed evidence rather than the optimistic
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# 100.0 default that masks weak links.
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observed_confidences: list[float] = []
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group_cols: set[str] = set()
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for idx_a, m in enumerate(members):
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for idx_b in range(idx_a + 1, len(members)):
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key = (min(m, members[idx_b]), max(m, members[idx_b]))
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if key in pair_info:
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conf, cols = pair_info[key]
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group_confidence = min(group_confidence, conf)
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observed_confidences.append(conf)
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group_cols.update(cols)
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if observed_confidences:
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group_confidence = min(observed_confidences)
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else:
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# Edge case: a group with no recorded pair info (shouldn't
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# happen for groups built from union-find on pair_info, but
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# be defensive). Fall back to 100.0 only for trivial groups.
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group_confidence = 100.0
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match_groups.append(MatchResult(
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group_id=gid,
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row_indices=members,
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@@ -462,6 +511,17 @@ def deduplicate(
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strategies = build_default_strategies(df)
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log_entries.append(f"Auto-detected {len(strategies)} match strategies")
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# Validate every strategy references real columns — silent skip
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# would let a typo (``e_mail`` instead of ``email``) produce a
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# confidently-empty result.
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referenced = {cs.column for s in strategies for cs in s.column_strategies}
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missing = sorted(c for c in referenced if c not in df.columns)
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if missing:
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raise ValueError(
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f"Strategy references columns not present in the input: {missing}. "
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f"Available columns: {list(df.columns)}"
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)
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# Log strategies
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for i, s in enumerate(strategies):
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cols_desc = ", ".join(
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@@ -542,18 +602,21 @@ def deduplicate(
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else:
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deduplicated_df = df_work.iloc[keep_indices].copy()
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removed_df = df_work.iloc[sorted(remove_indices)].copy() if remove_indices else pd.DataFrame()
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if remove_indices:
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removed_df = df_work.iloc[sorted(remove_indices)].copy()
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else:
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# Empty result: preserve column schema so downstream code can
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# rely on ``removed_df.columns == deduplicated_df.columns``.
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removed_df = df_work.iloc[0:0].copy()
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# Drop shadow columns from output
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norm_cols = [c for c in deduplicated_df.columns if str(c).startswith("_norm_")]
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deduplicated_df = deduplicated_df.drop(columns=norm_cols, errors="ignore")
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if not removed_df.empty:
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removed_df = removed_df.drop(columns=norm_cols, errors="ignore")
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removed_df = removed_df.drop(columns=norm_cols, errors="ignore")
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# Reset index
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deduplicated_df = deduplicated_df.reset_index(drop=True)
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if not removed_df.empty:
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removed_df = removed_df.reset_index(drop=True)
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removed_df = removed_df.reset_index(drop=True)
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removed_count = original_count - len(deduplicated_df)
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log_entries.append(f"Result: {original_count} → {len(deduplicated_df)} rows ({removed_count} removed)")
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@@ -152,7 +152,17 @@ def _vectorized_translate(
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def _vectorized_regex_sub(
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df: pd.DataFrame, pattern, repl: str, *, inplace: bool = False,
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) -> tuple[pd.DataFrame, int]:
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"""``str.replace(regex=True)`` shortcut for regex-based fixes."""
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"""``str.replace(regex=True)`` shortcut for regex-based fixes.
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Raises ``ValueError`` if *pattern* is malformed — callers (GUI/CLI)
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surface this with a clear message rather than letting an
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unannotated ``re.error`` propagate.
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"""
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try:
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re.compile(pattern)
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except re.error as e:
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raise ValueError(f"Invalid regex pattern {pattern!r}: {e}") from e
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out = df if inplace else df.copy()
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changed = 0
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for col in out.columns:
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@@ -319,7 +329,11 @@ def replace_null_sentinels(df: pd.DataFrame, payload: Optional[dict] = None) ->
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sentinels = payload.get("sentinels")
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if sentinels is None:
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sentinels = list(_a._NULL_LIKE)
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sentinel_set = {s.strip().lower() for s in sentinels}
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# Coerce non-string sentinels (the GUI / JSON payload may produce
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# ints, floats, bools) instead of crashing on .strip().
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sentinel_set = {
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str(s).strip().lower() for s in sentinels if s is not None
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}
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def fix(s: str) -> str:
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return "" if s.strip().lower() in sentinel_set else s
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@@ -109,8 +109,18 @@ def detect_header_row(path: Path, encoding: str = "utf-8", delimiter: str = ",",
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break
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if not row:
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continue
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# All cells must be non-empty, non-numeric strings
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if all(_looks_like_header(cell) for cell in row if cell.strip()):
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# Header heuristic:
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# - every non-empty cell looks like a header;
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# - at least 2 non-empty cells (or just 1 in a single-column
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# file). Without the count check, blank rows match
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||||
# vacuously (``all([])`` is True) and metadata banners
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# like ``["Report 2024", "", ""]`` claim row 0 falsely.
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non_empty = [cell for cell in row if cell.strip()]
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min_required = 1 if len(row) <= 1 else 2
|
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if (
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len(non_empty) >= min_required
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and all(_looks_like_header(cell) for cell in non_empty)
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):
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return idx
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return 0
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@@ -263,7 +273,11 @@ def _read_excel(
|
||||
header_row: Optional[int] = None,
|
||||
sheet_name: Optional[str | int] = 0,
|
||||
) -> pd.DataFrame:
|
||||
hdr = header_row if header_row is not None else 0
|
||||
hdr = (
|
||||
header_row
|
||||
if header_row is not None
|
||||
else _detect_excel_header_row(path, sheet_name)
|
||||
)
|
||||
logger.debug("Reading Excel {} (sheet={}, header_row={})", path.name, sheet_name, hdr)
|
||||
return pd.read_excel(
|
||||
path,
|
||||
@@ -275,6 +289,52 @@ def _read_excel(
|
||||
)
|
||||
|
||||
|
||||
def _detect_excel_header_row(
|
||||
path: Path,
|
||||
sheet_name: Optional[str | int] = 0,
|
||||
max_scan: int = 20,
|
||||
) -> int:
|
||||
"""Mirror of :func:`detect_header_row` for Excel workbooks.
|
||||
|
||||
Scans the first *max_scan* rows of *sheet_name* in read-only mode
|
||||
(so a 100 MB workbook doesn't get fully materialized) and returns
|
||||
the index of the first row where every non-empty cell looks like a
|
||||
column header. Falls back to 0.
|
||||
"""
|
||||
try:
|
||||
from openpyxl import load_workbook
|
||||
except ImportError:
|
||||
return 0
|
||||
|
||||
try:
|
||||
wb = load_workbook(path, read_only=True, data_only=True)
|
||||
except Exception:
|
||||
return 0
|
||||
try:
|
||||
if isinstance(sheet_name, int):
|
||||
names = wb.sheetnames
|
||||
target = names[sheet_name] if 0 <= sheet_name < len(names) else names[0]
|
||||
elif isinstance(sheet_name, str):
|
||||
target = sheet_name if sheet_name in wb.sheetnames else wb.sheetnames[0]
|
||||
else:
|
||||
target = wb.sheetnames[0]
|
||||
ws = wb[target]
|
||||
for idx, row in enumerate(ws.iter_rows(values_only=True)):
|
||||
if idx >= max_scan:
|
||||
break
|
||||
cells = ["" if v is None else str(v) for v in row]
|
||||
non_empty = [c for c in cells if c.strip()]
|
||||
min_required = 1 if len(cells) <= 1 else 2
|
||||
if (
|
||||
len(non_empty) >= min_required
|
||||
and all(_looks_like_header(c) for c in non_empty)
|
||||
):
|
||||
return idx
|
||||
return 0
|
||||
finally:
|
||||
wb.close()
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Writing
|
||||
# ---------------------------------------------------------------------------
|
||||
@@ -285,6 +345,7 @@ def write_file(
|
||||
*,
|
||||
file_format: Optional[str] = None,
|
||||
encoding: str = "utf-8-sig",
|
||||
delimiter: Optional[str] = None,
|
||||
) -> Path:
|
||||
"""Write a DataFrame to CSV or Excel.
|
||||
|
||||
@@ -292,8 +353,12 @@ def write_file(
|
||||
----------
|
||||
df : DataFrame to write
|
||||
path : output file path
|
||||
file_format : ``"csv"`` or ``"xlsx"``; auto-detected from *path* suffix if *None*
|
||||
file_format : ``"csv"``, ``"tsv"``, or ``"xlsx"``; auto-detected from
|
||||
*path* suffix if *None*
|
||||
encoding : output encoding (default ``utf-8-sig`` for Windows Excel compat)
|
||||
delimiter : field separator for delimited output. Defaults to ``,``
|
||||
for ``.csv``, ``\\t`` for ``.tsv``, and the explicit value
|
||||
otherwise. Ignored for Excel formats.
|
||||
|
||||
Returns the resolved output Path.
|
||||
"""
|
||||
@@ -302,7 +367,10 @@ def write_file(
|
||||
if fmt in ("xlsx", "xls"):
|
||||
df.to_excel(out, index=False, engine="openpyxl")
|
||||
else:
|
||||
df.to_csv(out, index=False, encoding=encoding)
|
||||
sep = delimiter if delimiter is not None else (
|
||||
"\t" if fmt == "tsv" else ","
|
||||
)
|
||||
df.to_csv(out, index=False, encoding=encoding, sep=sep)
|
||||
logger.info("Wrote {} rows to {}", len(df), out)
|
||||
return out
|
||||
|
||||
|
||||
@@ -69,7 +69,13 @@ def normalize_email(value: Optional[str]) -> str:
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def normalize_phone(value: Optional[str], default_region: str = "US") -> str:
|
||||
"""Parse with phonenumbers lib, return E.164. Fallback: digits-only."""
|
||||
"""Parse with phonenumbers lib, return E.164. Fallback: digits-only.
|
||||
|
||||
Extensions are preserved as a ``;ext=N`` suffix (RFC 3966 syntax) so
|
||||
two records ``+15551234567 ext 100`` and ``+15551234567 ext 200``
|
||||
don't normalize to the same key — they're different people at the
|
||||
same business.
|
||||
"""
|
||||
if not value or not isinstance(value, str):
|
||||
return ""
|
||||
stripped = value.strip()
|
||||
@@ -79,7 +85,10 @@ def normalize_phone(value: Optional[str], default_region: str = "US") -> str:
|
||||
try:
|
||||
parsed = phonenumbers.parse(stripped, default_region)
|
||||
if phonenumbers.is_possible_number(parsed):
|
||||
return phonenumbers.format_number(parsed, phonenumbers.PhoneNumberFormat.E164)
|
||||
base = phonenumbers.format_number(parsed, phonenumbers.PhoneNumberFormat.E164)
|
||||
if parsed.extension:
|
||||
return f"{base};ext={parsed.extension}"
|
||||
return base
|
||||
except phonenumbers.NumberParseException:
|
||||
pass
|
||||
|
||||
@@ -100,10 +109,16 @@ _NAME_SUFFIXES = {
|
||||
"jr", "sr", "ii", "iii", "iv", "v",
|
||||
"phd", "md", "esq", "dds", "rn",
|
||||
}
|
||||
# Surname particles dropped during normalization so that
|
||||
# ``Charles de Gaulle`` and ``Charles Gaulle`` produce the same key.
|
||||
_NAME_PARTICLES_DROP = {
|
||||
"van", "von", "de", "da", "del", "della", "di", "du",
|
||||
"der", "den", "le", "la", "el",
|
||||
}
|
||||
|
||||
|
||||
def normalize_name(value: Optional[str]) -> str:
|
||||
"""Strip titles/suffixes, collapse whitespace, case-fold."""
|
||||
"""Strip titles/suffixes/particles, collapse whitespace, case-fold."""
|
||||
if not value or not isinstance(value, str):
|
||||
return ""
|
||||
name = value.strip()
|
||||
@@ -126,6 +141,9 @@ def normalize_name(value: Optional[str]) -> str:
|
||||
while parts and parts[-1].rstrip(".") in _NAME_SUFFIXES:
|
||||
parts.pop()
|
||||
|
||||
# Drop surname particles wherever they appear.
|
||||
parts = [p for p in parts if p not in _NAME_PARTICLES_DROP]
|
||||
|
||||
return " ".join(parts)
|
||||
|
||||
|
||||
@@ -178,8 +196,34 @@ _USPS_ABBREVIATIONS: dict[str, str] = {
|
||||
}
|
||||
|
||||
|
||||
# US state name → 2-letter postal code. Substituted before tokenization
|
||||
# so ``California`` and ``CA`` normalize to the same key.
|
||||
_US_STATE_NAMES_NORM: dict[str, str] = {
|
||||
"alabama": "al", "alaska": "ak", "arizona": "az", "arkansas": "ar",
|
||||
"california": "ca", "colorado": "co", "connecticut": "ct",
|
||||
"delaware": "de", "florida": "fl", "georgia": "ga", "hawaii": "hi",
|
||||
"idaho": "id", "illinois": "il", "indiana": "in", "iowa": "ia",
|
||||
"kansas": "ks", "kentucky": "ky", "louisiana": "la", "maine": "me",
|
||||
"maryland": "md", "massachusetts": "ma", "michigan": "mi",
|
||||
"minnesota": "mn", "mississippi": "ms", "missouri": "mo",
|
||||
"montana": "mt", "nebraska": "ne", "nevada": "nv",
|
||||
"new hampshire": "nh", "new jersey": "nj", "new mexico": "nm",
|
||||
"new york": "ny", "north carolina": "nc", "north dakota": "nd",
|
||||
"ohio": "oh", "oklahoma": "ok", "oregon": "or", "pennsylvania": "pa",
|
||||
"rhode island": "ri", "south carolina": "sc", "south dakota": "sd",
|
||||
"tennessee": "tn", "texas": "tx", "utah": "ut", "vermont": "vt",
|
||||
"virginia": "va", "washington": "wa", "west virginia": "wv",
|
||||
"wisconsin": "wi", "wyoming": "wy",
|
||||
"district of columbia": "dc",
|
||||
}
|
||||
|
||||
|
||||
def normalize_address(value: Optional[str]) -> str:
|
||||
"""USPS abbreviation normalization, collapse whitespace, case-fold."""
|
||||
"""USPS abbreviation normalization, collapse whitespace, case-fold.
|
||||
|
||||
Spelled-out US state names are folded to their 2-letter codes so
|
||||
``California`` and ``CA`` normalize to the same matching key.
|
||||
"""
|
||||
if not value or not isinstance(value, str):
|
||||
return ""
|
||||
addr = value.strip()
|
||||
@@ -190,6 +234,13 @@ def normalize_address(value: Optional[str]) -> str:
|
||||
addr = addr.casefold()
|
||||
addr = addr.replace(".", " ").replace(",", " ")
|
||||
|
||||
# State names → 2-letter codes (longest first so ``new york`` wins
|
||||
# over ``new``-as-a-fragment).
|
||||
for full, code in sorted(
|
||||
_US_STATE_NAMES_NORM.items(), key=lambda kv: -len(kv[0])
|
||||
):
|
||||
addr = re.sub(rf"(?<!\w){re.escape(full)}(?!\w)", code, addr)
|
||||
|
||||
parts = addr.split()
|
||||
normalized_parts = []
|
||||
for part in parts:
|
||||
|
||||
@@ -191,10 +191,15 @@ def strip_zero_width(s: str) -> str:
|
||||
|
||||
|
||||
def strip_bom(s: str) -> str:
|
||||
"""Remove a leading ``U+FEFF`` (BOM) from the start of the string."""
|
||||
"""Remove a leading ``U+FEFF`` (BOM) from the start of the string.
|
||||
|
||||
Strips at most one BOM — multiple consecutive BOMs are unusual and
|
||||
the second one likely indicates concatenation artifact the caller
|
||||
should preserve so the issue stays visible.
|
||||
"""
|
||||
if not isinstance(s, str):
|
||||
return s
|
||||
return s.lstrip("")
|
||||
return s[1:] if s.startswith("") else s
|
||||
|
||||
|
||||
def strip_control(s: str) -> str:
|
||||
@@ -252,6 +257,9 @@ def smart_title_case(s: str) -> str:
|
||||
out.append(tok)
|
||||
continue
|
||||
lowered = tok.lower()
|
||||
# Particles stay lowercase only mid-string. The first and last
|
||||
# words of a title always capitalize, even when they're particles
|
||||
# (``A Story to Tell`` — first word ``A`` is capitalized).
|
||||
if 0 < i < last_idx and lowered in _TITLE_LOWERCASE_PARTICLES:
|
||||
out.append(lowered)
|
||||
continue
|
||||
@@ -278,7 +286,12 @@ def smart_title_case(s: str) -> str:
|
||||
|
||||
|
||||
def sentence_case(s: str) -> str:
|
||||
"""Lowercase, then capitalize the first cased letter after each ``. ! ?``."""
|
||||
"""Lowercase, then capitalize the first cased letter after each ``. ! ?``.
|
||||
|
||||
Non-letter, non-terminator characters (like opening quotes or
|
||||
parens) don't consume the "next letter" trigger, so ``"hello." "world"``
|
||||
becomes ``"Hello." "World"``.
|
||||
"""
|
||||
if not isinstance(s, str) or not s:
|
||||
return s
|
||||
lowered = s.lower()
|
||||
@@ -291,11 +304,6 @@ def sentence_case(s: str) -> str:
|
||||
if capitalize_next and c.isalpha():
|
||||
chars[i] = c.upper()
|
||||
capitalize_next = False
|
||||
elif c.strip():
|
||||
# Any non-whitespace, non-letter (e.g., quote, paren) doesn't
|
||||
# consume the "next letter" trigger.
|
||||
if c.isalpha():
|
||||
capitalize_next = False
|
||||
return "".join(chars)
|
||||
|
||||
|
||||
@@ -698,7 +706,7 @@ def visualize_hidden_html(s: str, *, mark_outer_whitespace: bool = False) -> str
|
||||
the page.
|
||||
"""
|
||||
if not isinstance(s, str):
|
||||
return ""
|
||||
return s # mirror visualize_hidden_text: pass non-strings through
|
||||
|
||||
leading = ""
|
||||
trailing = ""
|
||||
|
||||
303
tests/test_audit_fixes.py
Normal file
303
tests/test_audit_fixes.py
Normal file
@@ -0,0 +1,303 @@
|
||||
"""Regression tests for bugs surfaced by the cross-tool audit.
|
||||
|
||||
Each test pins a specific behavioral bug or gap that an audit
|
||||
identified. Test names match the BUG-N / GAP-N tags in the audit
|
||||
notes so a future reader can trace why each test exists.
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import json
|
||||
from pathlib import Path
|
||||
|
||||
import numpy as np
|
||||
import pandas as pd
|
||||
import pytest
|
||||
|
||||
from src.core.analyze import _NULL_LIKE, _detect_mixed_case_email
|
||||
import src.core.fixes as f
|
||||
from src.core.config import (
|
||||
ColumnStrategyConfig,
|
||||
DeduplicationConfig,
|
||||
StrategyConfig,
|
||||
)
|
||||
from src.core.dedup import (
|
||||
Algorithm,
|
||||
ColumnMatchStrategy,
|
||||
MatchStrategy,
|
||||
deduplicate,
|
||||
)
|
||||
from src.core.io import detect_header_row
|
||||
from src.core.text_clean import sentence_case, smart_title_case, strip_bom
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# BUG-1: dedup NaN values must not match as duplicates
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestDedupNaNHandling:
|
||||
def test_two_nan_emails_do_not_match(self):
|
||||
# Both rows have NaN for email; no other matching column. Without
|
||||
# the fix, str(NaN) == "nan" would match exactly and the rows
|
||||
# would silently merge.
|
||||
df = pd.DataFrame({
|
||||
"id": [1, 2],
|
||||
"email": [np.nan, np.nan],
|
||||
})
|
||||
strategies = [MatchStrategy(column_strategies=[
|
||||
ColumnMatchStrategy(column="email", algorithm=Algorithm.EXACT,
|
||||
threshold=100.0),
|
||||
])]
|
||||
result = deduplicate(df, strategies=strategies)
|
||||
assert len(result.deduplicated_df) == 2
|
||||
assert len(result.match_groups) == 0
|
||||
|
||||
def test_one_nan_one_real_does_not_match(self):
|
||||
df = pd.DataFrame({
|
||||
"email": [np.nan, "alice@example.com"],
|
||||
})
|
||||
strategies = [MatchStrategy(column_strategies=[
|
||||
ColumnMatchStrategy(column="email", algorithm=Algorithm.EXACT),
|
||||
])]
|
||||
result = deduplicate(df, strategies=strategies)
|
||||
assert len(result.deduplicated_df) == 2
|
||||
|
||||
def test_none_does_not_match_string_none(self):
|
||||
df = pd.DataFrame({
|
||||
"name": [None, "None"],
|
||||
})
|
||||
strategies = [MatchStrategy(column_strategies=[
|
||||
ColumnMatchStrategy(column="name", algorithm=Algorithm.EXACT),
|
||||
])]
|
||||
result = deduplicate(df, strategies=strategies)
|
||||
assert len(result.deduplicated_df) == 2
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# BUG-2: removed_df must preserve column schema even when empty
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestDedupRemovedDfSchema:
|
||||
def test_empty_removed_df_has_same_columns(self):
|
||||
df = pd.DataFrame({
|
||||
"name": ["alice", "bob", "carol"],
|
||||
"email": ["a@x.com", "b@x.com", "c@x.com"],
|
||||
})
|
||||
strategies = [MatchStrategy(column_strategies=[
|
||||
ColumnMatchStrategy(column="email", algorithm=Algorithm.EXACT),
|
||||
])]
|
||||
result = deduplicate(df, strategies=strategies)
|
||||
# No duplicates → empty removed_df, but columns must match.
|
||||
assert len(result.removed_df) == 0
|
||||
assert list(result.removed_df.columns) == list(result.deduplicated_df.columns)
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# GAP-3: missing column reference should raise
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestDedupMissingColumn:
|
||||
def test_missing_column_raises(self):
|
||||
df = pd.DataFrame({"email": ["a@x.com"]})
|
||||
strategies = [MatchStrategy(column_strategies=[
|
||||
ColumnMatchStrategy(column="e_mail", algorithm=Algorithm.EXACT),
|
||||
])]
|
||||
with pytest.raises(ValueError, match="not present in the input"):
|
||||
deduplicate(df, strategies=strategies)
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# GAP-4: threshold must be in [0, 100]
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestThresholdValidation:
|
||||
def test_negative_threshold_rejected(self):
|
||||
with pytest.raises(ValueError, match=r"\[0, 100\]"):
|
||||
ColumnMatchStrategy(column="x", threshold=-1)
|
||||
|
||||
def test_over_hundred_rejected(self):
|
||||
with pytest.raises(ValueError, match=r"\[0, 100\]"):
|
||||
ColumnMatchStrategy(column="x", threshold=101)
|
||||
|
||||
def test_zero_and_hundred_allowed(self):
|
||||
ColumnMatchStrategy(column="x", threshold=0)
|
||||
ColumnMatchStrategy(column="x", threshold=100)
|
||||
|
||||
def test_non_numeric_rejected(self):
|
||||
with pytest.raises(TypeError):
|
||||
ColumnMatchStrategy(column="x", threshold="high") # type: ignore[arg-type]
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# BUG-9: replace_null_sentinels must coerce non-string sentinels
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestReplaceNullSentinelsTypes:
|
||||
def test_int_sentinels_do_not_crash(self):
|
||||
df = pd.DataFrame({"x": ["0", "5", ""]})
|
||||
out, _ = f.replace_null_sentinels(df, {"sentinels": [0, "5"]})
|
||||
assert out.loc[0, "x"] == "" # "0" matched int 0 stringified
|
||||
assert out.loc[1, "x"] == "" # "5" matched
|
||||
assert out.loc[2, "x"] == "" # already empty
|
||||
|
||||
def test_none_sentinel_skipped(self):
|
||||
df = pd.DataFrame({"x": ["a", "b"]})
|
||||
# Should not crash on None entry in the sentinel list.
|
||||
out, _ = f.replace_null_sentinels(df, {"sentinels": ["a", None]})
|
||||
assert out.loc[0, "x"] == ""
|
||||
assert out.loc[1, "x"] == "b"
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# BUG-10: malformed regex should raise ValueError, not re.error
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestVectorizedRegexErrorHandling:
|
||||
def test_malformed_pattern_raises_valueerror(self):
|
||||
df = pd.DataFrame({"x": ["abc"]})
|
||||
with pytest.raises(ValueError, match="Invalid regex pattern"):
|
||||
f._vectorized_regex_sub(df, "[invalid", "")
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# NIT-12: strip_bom strips at most one BOM
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestStripBomSingleChar:
|
||||
def test_strips_one_leading_bom(self):
|
||||
assert strip_bom("hello") == "hello"
|
||||
|
||||
def test_does_not_strip_multiple_consecutive_boms(self):
|
||||
# Per docstring: "at most one BOM". Second BOM stays so the
|
||||
# caller can see something odd happened.
|
||||
assert strip_bom("hello") == "hello"
|
||||
|
||||
def test_no_bom_unchanged(self):
|
||||
assert strip_bom("hello") == "hello"
|
||||
|
||||
def test_non_string_passthrough(self):
|
||||
assert strip_bom(None) is None # type: ignore[arg-type]
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Smart title case — particle behavior at boundaries (regression / docs)
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestSmartTitleCaseBoundaries:
|
||||
def test_first_word_particle_capitalized(self):
|
||||
# "a" at index 0 is a particle but must capitalize as the first
|
||||
# word of a title.
|
||||
assert smart_title_case("a story") == "A Story"
|
||||
|
||||
def test_last_word_particle_capitalized(self):
|
||||
# "to" at the end is the last word; must capitalize.
|
||||
assert smart_title_case("things to") == "Things To"
|
||||
|
||||
def test_mid_string_particles_lowercase(self):
|
||||
assert smart_title_case("the cat in the hat") == "The Cat in the Hat"
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# NIT-14: sentence_case dead branch removed — regression guard
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestSentenceCaseUnchanged:
|
||||
def test_basic(self):
|
||||
assert sentence_case("hello. world.") == "Hello. World."
|
||||
|
||||
def test_open_paren_does_not_consume_trigger(self):
|
||||
# The dead-branch removal didn't change behavior; this is a
|
||||
# regression guard that opening punctuation still doesn't
|
||||
# capitalize itself but doesn't reset the trigger either.
|
||||
assert sentence_case('hello. "world"') == 'Hello. "World"'
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# BUG-18: detect_header_row must not pick all-empty rows
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestDetectHeaderRowEmptyRows:
|
||||
def test_all_empty_first_row_skipped(self, tmp_path: Path):
|
||||
# First row is all-empty — the header is on row 1.
|
||||
p = tmp_path / "blank_first.csv"
|
||||
p.write_text(",,\nname,email,phone\nalice,a@x.com,555\n")
|
||||
assert detect_header_row(p) == 1
|
||||
|
||||
def test_pure_header_at_row_zero(self, tmp_path: Path):
|
||||
p = tmp_path / "normal.csv"
|
||||
p.write_text("name,email,phone\nalice,a@x.com,555\n")
|
||||
assert detect_header_row(p) == 0
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# BUG-20: config.from_dict must accept unknown fields (forward compat)
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestConfigForwardCompat:
|
||||
def test_extra_field_in_column_config_ignored(self, tmp_path: Path):
|
||||
# Simulate a config file written by a future version with an
|
||||
# extra ``priority`` field.
|
||||
config_dict = {
|
||||
"strategies": [{
|
||||
"columns": [{
|
||||
"column": "email",
|
||||
"algorithm": "exact",
|
||||
"threshold": 100.0,
|
||||
"normalizer": None,
|
||||
"priority": 5, # future field — must not crash
|
||||
}],
|
||||
}],
|
||||
"survivor_rule": "first",
|
||||
"merge": False,
|
||||
}
|
||||
loaded = DeduplicationConfig.from_dict(config_dict)
|
||||
assert len(loaded.strategies) == 1
|
||||
assert loaded.strategies[0].columns[0].column == "email"
|
||||
|
||||
def test_roundtrip_then_reload_with_extra(self, tmp_path: Path):
|
||||
cfg = DeduplicationConfig(
|
||||
strategies=[StrategyConfig(columns=[
|
||||
ColumnStrategyConfig(column="email"),
|
||||
])],
|
||||
)
|
||||
path = tmp_path / "cfg.json"
|
||||
cfg.to_file(path)
|
||||
# Manually inject an unknown field to simulate forward-compat.
|
||||
data = json.loads(path.read_text())
|
||||
data["strategies"][0]["columns"][0]["future_thing"] = "abc"
|
||||
path.write_text(json.dumps(data))
|
||||
loaded = DeduplicationConfig.from_file(path)
|
||||
assert loaded.strategies[0].columns[0].column == "email"
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# BUG-22: mixed-case email detector must not flag all-None columns
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestMixedCaseEmailFalsePositive:
|
||||
def test_all_none_email_column_no_finding(self):
|
||||
df = pd.DataFrame({
|
||||
"email": [None, None, None],
|
||||
})
|
||||
findings = _detect_mixed_case_email(df)
|
||||
assert findings == []
|
||||
|
||||
def test_real_mixed_case_still_flagged(self):
|
||||
df = pd.DataFrame({
|
||||
"email": ["Alice@X.com", "bob@y.com"],
|
||||
})
|
||||
findings = _detect_mixed_case_email(df)
|
||||
assert len(findings) == 1
|
||||
assert findings[0].column == "email"
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# NIT-24: <NA> recognized as a null-like sentinel
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestNullLikeIncludesPandasNA:
|
||||
def test_pd_na_string_repr_recognized(self):
|
||||
# str(pd.NA) → "<NA>" — when a DataFrame is loaded with
|
||||
# keep_default_na=False, pandas NA values appear as the literal
|
||||
# string "<NA>" and the analyzer should flag them.
|
||||
assert "<na>" in _NULL_LIKE
|
||||
238
tests/test_fixes_unit.py
Normal file
238
tests/test_fixes_unit.py
Normal file
@@ -0,0 +1,238 @@
|
||||
"""Isolated unit tests for individual fix functions in src.core.fixes.
|
||||
|
||||
The integration tests at tests/test_normalize.py exercise these
|
||||
functions through the full analyze→fix pipeline. These tests pin each
|
||||
function's behavior in isolation so a regression surfaces close to the
|
||||
broken function rather than at the pipeline output.
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import pandas as pd
|
||||
import pytest
|
||||
|
||||
from src.core.fixes import (
|
||||
clean_headers,
|
||||
normalize_line_endings,
|
||||
repair_mojibake,
|
||||
strip_nbsp,
|
||||
strip_zero_width,
|
||||
trim_whitespace,
|
||||
)
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# trim_whitespace
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestTrimWhitespace:
|
||||
def test_strips_leading_trailing(self):
|
||||
df = pd.DataFrame({"x": [" hello ", " world "]})
|
||||
out, changed = trim_whitespace(df)
|
||||
assert list(out["x"]) == ["hello", "world"]
|
||||
assert changed == 2
|
||||
|
||||
def test_collapses_internal_runs(self):
|
||||
df = pd.DataFrame({"x": ["a b c"]})
|
||||
out, _ = trim_whitespace(df)
|
||||
assert out.loc[0, "x"] == "a b c"
|
||||
|
||||
def test_preserves_internal_in_structured(self):
|
||||
# Phone-shaped strings keep internal spacing (often semantic).
|
||||
df = pd.DataFrame({"x": ["(555) 123-4567"]})
|
||||
out, changed = trim_whitespace(df)
|
||||
assert out.loc[0, "x"] == "(555) 123-4567"
|
||||
assert changed == 0
|
||||
|
||||
def test_empty_df(self):
|
||||
df = pd.DataFrame({"x": []})
|
||||
out, changed = trim_whitespace(df)
|
||||
assert len(out) == 0
|
||||
assert changed == 0
|
||||
|
||||
def test_no_string_columns(self):
|
||||
df = pd.DataFrame({"n": [1, 2, 3]})
|
||||
out, changed = trim_whitespace(df)
|
||||
assert changed == 0
|
||||
assert list(out["n"]) == [1, 2, 3]
|
||||
|
||||
def test_nan_preserved(self):
|
||||
df = pd.DataFrame({"x": [" ok ", None]})
|
||||
out, _ = trim_whitespace(df)
|
||||
assert out.loc[0, "x"] == "ok"
|
||||
# NaN/None passes through (becomes empty string after strip OR stays)
|
||||
assert out.loc[1, "x"] is None or out.loc[1, "x"] == ""
|
||||
|
||||
def test_idempotent(self):
|
||||
df = pd.DataFrame({"x": [" hello world "]})
|
||||
out1, _ = trim_whitespace(df)
|
||||
out2, changed2 = trim_whitespace(out1)
|
||||
assert changed2 == 0
|
||||
assert list(out2["x"]) == list(out1["x"])
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# strip_nbsp
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestStripNbsp:
|
||||
def test_replaces_nbsp_with_ascii_space(self):
|
||||
df = pd.DataFrame({"x": ["a b"]})
|
||||
out, changed = strip_nbsp(df)
|
||||
assert out.loc[0, "x"] == "a b"
|
||||
assert changed == 1
|
||||
|
||||
def test_no_change_when_clean(self):
|
||||
df = pd.DataFrame({"x": ["a b c"]})
|
||||
out, changed = strip_nbsp(df)
|
||||
assert changed == 0
|
||||
|
||||
def test_other_unicode_spaces(self):
|
||||
# Em space (U+2003), thin space (U+2009)
|
||||
df = pd.DataFrame({"x": ["a b c"]})
|
||||
out, _ = strip_nbsp(df)
|
||||
assert out.loc[0, "x"] == "a b c"
|
||||
|
||||
def test_idempotent(self):
|
||||
df = pd.DataFrame({"x": ["a b"]})
|
||||
out1, _ = strip_nbsp(df)
|
||||
out2, changed2 = strip_nbsp(out1)
|
||||
assert changed2 == 0
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# strip_zero_width
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestStripZeroWidth:
|
||||
def test_removes_zero_width_space(self):
|
||||
df = pd.DataFrame({"x": ["ab"]})
|
||||
out, changed = strip_zero_width(df)
|
||||
assert out.loc[0, "x"] == "ab"
|
||||
assert changed == 1
|
||||
|
||||
def test_removes_zero_width_joiner(self):
|
||||
df = pd.DataFrame({"x": ["ab"]})
|
||||
out, _ = strip_zero_width(df)
|
||||
assert out.loc[0, "x"] == "ab"
|
||||
|
||||
def test_clean_passthrough(self):
|
||||
df = pd.DataFrame({"x": ["clean"]})
|
||||
out, changed = strip_zero_width(df)
|
||||
assert changed == 0
|
||||
|
||||
def test_idempotent(self):
|
||||
df = pd.DataFrame({"x": ["abc"]})
|
||||
out1, _ = strip_zero_width(df)
|
||||
out2, changed2 = strip_zero_width(out1)
|
||||
assert changed2 == 0
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# normalize_line_endings
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestNormalizeLineEndings:
|
||||
def test_crlf_to_lf(self):
|
||||
df = pd.DataFrame({"x": ["line1\r\nline2"]})
|
||||
out, changed = normalize_line_endings(df)
|
||||
assert out.loc[0, "x"] == "line1\nline2"
|
||||
assert changed == 1
|
||||
|
||||
def test_bare_cr_to_lf(self):
|
||||
df = pd.DataFrame({"x": ["line1\rline2"]})
|
||||
out, _ = normalize_line_endings(df)
|
||||
assert out.loc[0, "x"] == "line1\nline2"
|
||||
|
||||
def test_already_lf_unchanged(self):
|
||||
df = pd.DataFrame({"x": ["line1\nline2"]})
|
||||
out, changed = normalize_line_endings(df)
|
||||
assert changed == 0
|
||||
|
||||
def test_idempotent(self):
|
||||
df = pd.DataFrame({"x": ["a\r\nb\rc"]})
|
||||
out1, _ = normalize_line_endings(df)
|
||||
out2, changed2 = normalize_line_endings(out1)
|
||||
assert changed2 == 0
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# clean_headers
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestCleanHeaders:
|
||||
def test_strips_bom_from_header(self):
|
||||
df = pd.DataFrame({"name": [1], "email": [2]})
|
||||
out, changed = clean_headers(df)
|
||||
assert "name" in out.columns
|
||||
assert "name" not in out.columns
|
||||
assert changed >= 1
|
||||
|
||||
def test_strips_nbsp_from_header(self):
|
||||
df = pd.DataFrame({"first name": [1]})
|
||||
out, _ = clean_headers(df)
|
||||
assert "first name" in out.columns
|
||||
|
||||
def test_strips_trailing_whitespace_from_header(self):
|
||||
df = pd.DataFrame({"Email ": [1]})
|
||||
out, _ = clean_headers(df)
|
||||
assert "Email" in out.columns
|
||||
assert "Email " not in out.columns
|
||||
|
||||
def test_non_string_label_preserved(self):
|
||||
df = pd.DataFrame({0: [1], 1: [2]})
|
||||
out, changed = clean_headers(df)
|
||||
assert list(out.columns) == [0, 1]
|
||||
assert changed == 0
|
||||
|
||||
def test_clean_headers_idempotent(self):
|
||||
df = pd.DataFrame({"name": [1]})
|
||||
out1, _ = clean_headers(df)
|
||||
out2, changed2 = clean_headers(out1)
|
||||
assert changed2 == 0
|
||||
assert list(out2.columns) == list(out1.columns)
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# repair_mojibake
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
_HAS_FTFY = True
|
||||
try:
|
||||
import ftfy # noqa: F401
|
||||
except ImportError:
|
||||
_HAS_FTFY = False
|
||||
|
||||
|
||||
@pytest.mark.skipif(not _HAS_FTFY, reason="ftfy library not installed — fix is a no-op")
|
||||
class TestRepairMojibake:
|
||||
def test_classic_cafe_repair(self):
|
||||
df = pd.DataFrame({"x": ["café"]}) # café miscoded
|
||||
out, changed = repair_mojibake(df)
|
||||
assert out.loc[0, "x"] == "café"
|
||||
assert changed == 1
|
||||
|
||||
def test_clean_text_unchanged(self):
|
||||
df = pd.DataFrame({"x": ["café"]})
|
||||
out, changed = repair_mojibake(df)
|
||||
assert changed == 0
|
||||
|
||||
def test_no_string_columns(self):
|
||||
df = pd.DataFrame({"n": [1, 2]})
|
||||
out, changed = repair_mojibake(df)
|
||||
assert changed == 0
|
||||
|
||||
def test_idempotent(self):
|
||||
df = pd.DataFrame({"x": ["café"]})
|
||||
out1, _ = repair_mojibake(df)
|
||||
out2, changed2 = repair_mojibake(out1)
|
||||
assert changed2 == 0
|
||||
|
||||
|
||||
class TestRepairMojibakeNoFtfy:
|
||||
@pytest.mark.skipif(_HAS_FTFY, reason="ftfy installed — exercises the no-op path")
|
||||
def test_returns_input_unchanged_without_ftfy(self):
|
||||
df = pd.DataFrame({"x": ["café"]})
|
||||
out, changed = repair_mojibake(df)
|
||||
assert changed == 0
|
||||
assert out.loc[0, "x"] == "café"
|
||||
@@ -261,3 +261,78 @@ class TestReadCsvRepaired:
|
||||
df, repair = read_csv_repaired(f)
|
||||
assert len(df) == 2
|
||||
assert repair.changed is False
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Round-trip integrity (audit GAP-19, GAP-21)
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestRoundTrip:
|
||||
def test_csv_roundtrip_preserves_values(self, tmp_path):
|
||||
df = pd.DataFrame({
|
||||
"id": ["1", "2", "3"],
|
||||
"name": ["Alice", "Bob", "Carol"],
|
||||
"amount": ["10.50", "20.25", "30.00"],
|
||||
})
|
||||
path = tmp_path / "rt.csv"
|
||||
write_file(df, path)
|
||||
loaded = read_file(path)
|
||||
assert list(loaded.columns) == list(df.columns)
|
||||
assert len(loaded) == len(df)
|
||||
for col in df.columns:
|
||||
assert list(loaded[col]) == list(df[col])
|
||||
|
||||
def test_tsv_roundtrip_via_extension(self, tmp_path):
|
||||
df = pd.DataFrame({"a": ["1", "2"], "b": ["x", "y, z"]})
|
||||
path = tmp_path / "rt.tsv"
|
||||
write_file(df, path)
|
||||
# Confirm tab is used and embedded comma in 'b' survives.
|
||||
loaded = read_file(path)
|
||||
assert list(loaded.columns) == ["a", "b"]
|
||||
assert loaded.iloc[1]["b"] == "y, z"
|
||||
|
||||
def test_semicolon_roundtrip_via_explicit_delimiter(self, tmp_path):
|
||||
df = pd.DataFrame({"a": ["1", "2"], "b": ["x", "y"]})
|
||||
path = tmp_path / "rt.csv"
|
||||
write_file(df, path, delimiter=";")
|
||||
loaded = read_file(path)
|
||||
assert list(loaded.columns) == ["a", "b"]
|
||||
assert loaded.iloc[0]["a"] == "1"
|
||||
|
||||
def test_utf8_bom_non_ascii_roundtrip(self, tmp_path):
|
||||
df = pd.DataFrame({"name": ["café", "naïve", "résumé"]})
|
||||
path = tmp_path / "utf8.csv"
|
||||
write_file(df, path)
|
||||
loaded = read_file(path)
|
||||
assert list(loaded["name"]) == ["café", "naïve", "résumé"]
|
||||
|
||||
|
||||
class TestExcelHeaderDetection:
|
||||
def test_excel_with_metadata_rows(self, tmp_path):
|
||||
from openpyxl import Workbook
|
||||
wb = Workbook()
|
||||
ws = wb.active
|
||||
# Two leading blank rows + header + data.
|
||||
ws.append(["Report generated 2024-01-15", None, None])
|
||||
ws.append([None, None, None])
|
||||
ws.append(["name", "email", "phone"])
|
||||
ws.append(["alice", "a@x.com", "555-1234"])
|
||||
ws.append(["bob", "b@x.com", "555-5678"])
|
||||
path = tmp_path / "report.xlsx"
|
||||
wb.save(path)
|
||||
df = read_file(path)
|
||||
# Auto-detected header row 2 → columns are name/email/phone
|
||||
assert list(df.columns) == ["name", "email", "phone"]
|
||||
assert len(df) == 2
|
||||
|
||||
def test_excel_normal_header_row_zero(self, tmp_path):
|
||||
from openpyxl import Workbook
|
||||
wb = Workbook()
|
||||
ws = wb.active
|
||||
ws.append(["name", "email"])
|
||||
ws.append(["alice", "a@x.com"])
|
||||
path = tmp_path / "normal.xlsx"
|
||||
wb.save(path)
|
||||
df = read_file(path)
|
||||
assert list(df.columns) == ["name", "email"]
|
||||
assert len(df) == 1
|
||||
|
||||
@@ -156,3 +156,51 @@ class TestGetNormalizer:
|
||||
def test_unknown_raises(self):
|
||||
with pytest.raises(ValueError):
|
||||
get_normalizer("unknown_type")
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Alignment with format_standardize: extension preservation, state codes,
|
||||
# particle handling. See audit GAPs 15/16/17.
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
class TestNormalizerAudit:
|
||||
def test_phone_extension_preserved(self):
|
||||
# Two records with different extensions must NOT normalize to
|
||||
# the same key — they're different people at the same business.
|
||||
a = normalize_phone("+15551234567 ext 100")
|
||||
b = normalize_phone("+15551234567 ext 200")
|
||||
assert a != b
|
||||
assert a == "+15551234567;ext=100"
|
||||
|
||||
def test_phone_no_extension_unchanged(self):
|
||||
assert normalize_phone("+15551234567") == "+15551234567"
|
||||
|
||||
def test_address_state_name_to_code(self):
|
||||
# "California" and "CA" produce the same matching key.
|
||||
a = normalize_address("123 Main St, Los Angeles, California 90001")
|
||||
b = normalize_address("123 Main St, Los Angeles, CA 90001")
|
||||
assert a == b
|
||||
|
||||
def test_address_multiword_state_name(self):
|
||||
a = normalize_address("100 Beacon St, Boston, Massachusetts 02101")
|
||||
b = normalize_address("100 Beacon St, Boston, MA 02101")
|
||||
assert a == b
|
||||
|
||||
def test_address_does_not_butcher_city_named_after_state(self):
|
||||
# "New York" appearing as a city should still fold to "ny" —
|
||||
# this is intentional for matching keys (we want ``New York, NY``
|
||||
# and ``NY, NY`` to be the same record) even though the
|
||||
# standardizer (display) would preserve the city name.
|
||||
out = normalize_address("123 Main St, New York, NY 10001")
|
||||
assert "ny" in out
|
||||
|
||||
def test_name_particle_dropped(self):
|
||||
# "Charles de Gaulle" and "Charles Gaulle" produce the same key.
|
||||
assert normalize_name("Charles de Gaulle") == normalize_name("Charles Gaulle")
|
||||
|
||||
def test_name_van_dropped(self):
|
||||
assert normalize_name("Vincent van Gogh") == normalize_name("Vincent Gogh")
|
||||
|
||||
def test_name_particle_idempotent(self):
|
||||
out = normalize_name("Vincent van Gogh")
|
||||
assert normalize_name(out) == out
|
||||
|
||||
@@ -537,8 +537,10 @@ class TestVisualizeHidden:
|
||||
|
||||
def test_non_string_passthrough(self):
|
||||
from src.core.text_clean import visualize_hidden_text, visualize_hidden_html
|
||||
# Both functions now consistently pass non-strings through
|
||||
# unchanged (audit NIT-13).
|
||||
assert visualize_hidden_text(None) is None # type: ignore[arg-type]
|
||||
assert visualize_hidden_html(None) == ""
|
||||
assert visualize_hidden_html(None) is None # type: ignore[arg-type]
|
||||
def test_html_marks_leading_trailing_ascii_space(self):
|
||||
from src.core.text_clean import visualize_hidden_html
|
||||
out = visualize_hidden_html(" Alice ", mark_outer_whitespace=True)
|
||||
|
||||
Reference in New Issue
Block a user