Closes 12 bugs and 8 gaps surfaced by parallel audits across all core modules, plus aligns the dedup-side normalizers with the new format_standardize behavior where they had silently diverged. Bugs (data integrity / correctness): - dedup: NaN/None values matched as duplicates because str(None)='None'. Two rows with missing email silently merged. - dedup: removed_df had 0 columns when nothing was removed; downstream code expecting matching schema broke. Now preserves column shape. - dedup: ColumnMatchStrategy threshold accepted any value; out-of-range silently broke matching. Validated to [0, 100] in __post_init__. - dedup: strategy referencing a missing column was silently skipped. Now raises ValueError listing available columns. - fixes: replace_null_sentinels crashed on non-string sentinels (int/None from JSON payload). Coerced to str. - fixes: _vectorized_regex_sub raised raw re.error on bad patterns. Now wraps as ValueError with clear message. - io: detect_header_row mis-identified all-empty and metadata-only rows as headers (all([]) is True). Now requires ≥2 non-empty cells. - config: from_dict crashed when JSON had unknown fields, breaking forward compat. Now filters to known fields. - analyze: mixed-case email detector flagged all-None columns because str(None)='None' contains both N and one. Now drops NaN before stringify. New features and gap closures: - io: _detect_excel_header_row mirrors detect_header_row for Excel via openpyxl read-only; _read_excel uses it when header_row=None. - io: write_file gains delimiter + encoding params; .tsv extension defaults to tab. - normalizers: normalize_phone preserves extensions as ;ext=N suffix. - normalizers: normalize_address folds spelled-out US state names to 2-letter codes (California ≡ CA). - normalizers: normalize_name drops surname particles (van, de, von) so "Charles de Gaulle" ≡ "Charles Gaulle" for matching. - analyze: new _detect_inconsistent_date_format detector flags columns with mixed ISO/US/EU date shapes; routes to format standardizer. - analyze: _NULL_LIKE recognizes "<na>" (pd.NA repr). - analyze: duplicate-row finding renamed count → n_extra (rows that would actually be removed) with clarified description. - dedup: group_confidence no longer falsely 100.0 when transitive group members lack a recorded direct pair; falls back to 100.0 only when truly no pairs were observed. - dedup: MatchResult / DeduplicationResult docstrings clarify that row_indices refer to the input frame's positional index (output index is reset). - text_clean: visualize_hidden_html(None) now returns None (matches visualize_hidden_text); strip_bom strips at most one BOM per call; sentence_case dead elif branch removed. Tests: - tests/test_audit_fixes.py — 28 regression tests, one or more per numbered finding, named after BUG/GAP/NIT tags so future readers can trace each test back to its audit. - tests/test_fixes_unit.py — 26 isolated unit tests for previously integration-only fix functions (trim_whitespace, strip_nbsp, strip_zero_width, normalize_line_endings, clean_headers, repair_mojibake — last skipped if ftfy unavailable). - tests/test_io.py — adds CSV / TSV / semicolon / UTF-8-BOM round-trip tests + Excel auto-header-detection tests. - tests/test_normalizers.py — adds 8 tests for the alignment work above (phone extension, state names, particles). Adds .claude/ to .gitignore (agent worktrees + local settings). Full project suite: 1197 passed, 4 skipped, 17 xfailed. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
DataTools
A bundle of Python data-cleaning tools for CSV and Excel files. Two scripts ship today; more are in build.
| # | Tool | What it does |
|---|---|---|
| 01 | Deduplicator | Find and remove duplicate rows with exact + fuzzy matching, smart normalization, and interactive review. |
| 02 | Text Cleaner | Trim whitespace, fold smart quotes, strip invisible / control characters, normalize Unicode, normalize line endings, optional case conversion. |
Deduplicator
Features
- Zero-config start — auto-detects encoding, delimiters, headers, and match columns
- Fuzzy matching — Jaro-Winkler, Levenshtein, and token set ratio algorithms
- 5 built-in normalizers — email (Gmail dot/plus), phone (E.164), name (titles/suffixes), address (USPS), string (whitespace/case)
- Merge mode — fill missing fields in the surviving row from removed duplicates
- 4 survivor rules — keep first, last, most complete, or most recent row per group
- Interactive review — inspect match groups with inline checkboxes and column dropdowns, cherry-pick values, preview surviving rows live
- Config profiles — save and reload your settings as JSON for repeatable runs
- Dual interface — full CLI for automation, Streamlit GUI for visual review
- Dry-run by default — preview what would change before writing anything
- Audit trail — every run produces a match groups report and timestamped log
Quick Start
Install
pip install -r requirements.txt
CLI
# Preview duplicates (dry run — no files written)
python -m src.cli customers.csv
# Remove duplicates and save the result
python -m src.cli customers.csv --apply
# Fuzzy-match names at 80% similarity, merge missing fields
python -m src.cli customers.csv --fuzzy name --threshold 80 --merge --apply
# Interactively review each match group
python -m src.cli customers.csv --review --apply
GUI
streamlit run src/gui/app.py
Upload a file, click Find Duplicates, review match groups side-by-side, then download the cleaned result.
CLI Usage Summary
python -m src.cli INPUT_FILE [OPTIONS]
Options:
--apply Write output files (default: preview only)
--output, -o PATH Output file path
--subset, -s COLS Columns to match on (comma-separated)
--key, -k COLS Strong-key columns for exact matching
--fuzzy COLS Columns to fuzzy-match
--algorithm, -a ALG levenshtein | jaro_winkler | token_set_ratio
--threshold, -t N Similarity threshold 0-100 (default: 85)
--normalize COL:TYPE Per-column normalizers (e.g., email:email,phone:phone)
--survivor RULE first | last | most-complete | most-recent
--merge Fill missing fields from removed duplicates
--review Interactively review each match group
--config PATH Load settings from a JSON config file
--save-config PATH Save current settings to JSON
--sheet NAME Excel sheet name or 0-based index
--encoding ENC Override auto-detected encoding
--header-row N 0-based header row index
--help Show full help
Sample Output
$ python -m src.cli samples/messy_sales.csv
Reading messy_sales.csv...
50 rows, 8 columns
Finding duplicates...
──────────────────────────────────────────────────
File: messy_sales.csv
Rows in: 50
Rows out: 28
Removed: 22
Groups: 22
──────────────────────────────────────────────────
Match groups:
Group 1: rows [1, 2] → keep row 1 (confidence: 100.0%, matched on: email)
Group 2: rows [3, 4] → keep row 3 (confidence: 92.3%, matched on: name, phone)
...
This was a preview. Add --apply to write the output files.
Output Files
When --apply is used, three files are produced:
| File | Contents |
|---|---|
{input}_deduplicated.csv |
Cleaned data with duplicates removed |
{input}_removed.csv |
Rows that were removed |
{input}_match_groups.csv |
Audit trail: group ID, confidence, matched columns, survivor flag |
Text Cleaner
Character-level hygiene for messy CSV / Excel input. Solves the dirty-data failure modes that silently break VLOOKUPs, dedup runs, and downstream imports:
- Trailing / leading whitespace and tabs in cells
- Non-breaking spaces (
U+00A0) hiding inside text where regular spaces should be - Smart quotes pasted from Word (
""''→""'') - Em / en dashes, ellipsis, other typographic Unicode
- Zero-width and bidi-mark characters (
U+200B,U+200C,U+200D, etc.) - BOMs from Excel "Save As CSV UTF-8"
- Mixed line endings (
\r\n, bare\r) inside multi-line cells - Control characters (
U+0000-U+001Fminus\t \n \r) - Optional Unicode NFC / NFKC normalization
- Optional per-column case conversion (UPPER / lower / smart Title / Sentence)
# Preview what would change (dry-run)
python -m src.cli_text_clean samples/messy_text.csv
# Apply the safe defaults
python -m src.cli_text_clean samples/messy_text.csv --apply
# Title-case the name column, upper-case the SKU column
python -m src.cli_text_clean products.csv --case title:name,upper:sku --apply
# Just trim and collapse — nothing fancy
python -m src.cli_text_clean messy.csv --preset minimal --apply
Three presets: minimal (trim + collapse only), excel-hygiene (default; everything safe ON), paranoid (adds lossy NFKC fold).
Outputs {input}_cleaned.csv plus a per-cell {input}_changes.csv audit (row, column, old, new, ops applied).
See docs/CLI-REFERENCE.md for every flag.
Review & Normalize gate
Every uploaded file passes through a CSV-normalization gate before any tool page sees it. The analyzer scans for ~15 issue types — whitespace pollution, NBSP / zero-width chars, mixed line endings, BOM artifacts, encoding misdetections, smart punctuation, dirty headers, null sentinels, mojibake, and more — and tags each finding by confidence (high / medium / low) and fix action (the algorithm in src/core/fixes.py that resolves it).
In the GUI, the Review & Normalize page renders one expandable card per finding with a decision control (Auto-fix / Skip / Customize), a live before-and-after preview, an encoding-override picker for misdetected codepages, and an Advanced output options block (encoding, delimiter, line terminator) for the download. Tool pages refuse to load until the gate passes.
See docs/USER-GUIDE.md §3.3 for the user-facing walkthrough and docs/TECHNICAL.md §10.2.1–10.2.4 for the developer-facing API.
Documentation
- Requirements — short-form numbered list: file size, codepages, delimiters, detectors, performance targets
- User Guide — installation, GUI workflow, the Review & Normalize gate
- CLI Reference — every flag with examples and recipe sections
- Technical — architecture, gate internals, finding schema, fix registry
- Developer Guide — extending the bundle, adding fixes / detectors
Requirements
- Python 3.10+
- Dependencies: pandas, openpyxl, rapidfuzz, typer, phonenumbers, loguru, tqdm, charset-normalizer
License
Proprietary. All rights reserved.